This product is registered by Altif Laboratories Co., Ltd..
About This Product
■Intuitive operation, ready to use -- Display, drawing, and video functions
・Display of proteins and DNA/RNA in various display formats
・Operation: Interlocking operation of 3D structure and amino acid sequence, saving state as Waals document
・Display: Stereo display, split screen/switchable display compatible with multiple files, automatic rotation
・Drawing support: Label, distance display, dotted line, Depth Cueing, Transparent
・Workspace function: Extract selected part and switch display
・Measurement of interatomic distance in 3D structure, selection based on distance
・Video automatic generation: Automatically generate videos of rotation, shaking, etc. from the created diagram
・PDB format editing: secondary structure assignment (DSSP), amino acid residue registration, structure deletion
■Full of search functions -- Detection and overlapping by distance (Standard version only)
・Superimposition of proteins and DNA: Automatic superimposition, Superimpose (residue specification, atom specification)
・Comparison of protein 3D structures: Automatic detection of similar structures, calculation of RMSD
・Interaction analysis support: Detection of nearby residues based on interatomic distances between proteins and proteins and between proteins and ligands, color-coded display based on distances
・Merge function: Import 3D structure based on superposition
■Waals Standard Edition: Check/Compare
■Overlap and compare
Auto-Fit, which automatically overlaps, and Superimpose, which overlaps specified residues or atoms. You can calculate the number of overlapping residues and RMSD, and compare the similarity of 3D structures numerically.
■Investigating the effects of mutations
Comparing the mutant model obtained with SWISS-MODEL etc. with the wild type, the structural differences become clear. Waals makes it easy to investigate the location of mutations and surrounding structures.
■Investigating the binding site with small molecules
You can extract residues within a specified distance between a ligand or inhibitor and a protein. The distances between atoms are displayed in different colors and the distances between atoms are output in a table format. Residues important for binding can be detected.
■Investigating protein interactions
Extracts residues within a specified distance between proteins or between DNA/RNA and proteins, and outputs the distances between atoms in a table format. Interfaces can be comprehensively detected using antigens and antibodies, receptors and ligands, etc.
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Product
Waals standard version software for displaying and analyzing protein 3D structures
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